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Wiley InterScience

Annals of Human Genetics

Annals of Human Genetics

Volume 70 Issue 6, Pages 867 - 881

Published Online: 16 May 2006

Journal compilation © 2010 Blackwell Publishing Ltd/University College London



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QTL Mapping Under Ascertainment
J. Peng 1,* and D. Siegmund 2
  1 Department of Statistics, University of California, Davis, CA 95616   2 Department of Statistics, Stanford University, Stanford, CA 94305
Correspondence to   *E-mail: jie@wald.ucdavis.edu
Copyright 2006 The Authors Journal compilation © 2006 University College London
KEYWORDS
Gene mapping • Quantitative trait • Ascertainment • Efficient score

ABSTRACT

Mapping quantitative trait loci (QTL) using ascertained sibships is discussed. It is shown that under the standard normality assumption of variance components analysis the efficient scores are unchanged by ascertainment, and two different schemes of ascertainment correction suggested in the literature are asymptotically equivalent. The use of conditional maximum likelihood estimators derived under the normality assumption to estimate nuisance parameters is shown to result in only a small loss of power compared to the case of known parameters, even when the distribution of phenotypes is non-normal and/or the ascertainment criterion is ill defined.


Received: 2 October 2005
  Accepted: 15 February 2006

DIGITAL OBJECT IDENTIFIER (DOI)
10.1111/j.1469-1809.2006.00286.x About DOI

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